P2 Update Manager

20.05.2010 Finally i was able to integrate the “p2” update manager into Bio7 which will be shipped with the next release. What i really like is that it is possible to integrate the git plugin for Eclipse. Here are some Screenshots of the results. In the third screenshot ImageJ sources were downloaded into the Bio7 … Read more

Blogs about R

I found the following link very useful because it aggregates articles about R from different blogs. Many of the articles are interesting in relation to ecological modelling because they refer to new aspects of spatial analysis and environmental topics. Link: http://www.r-bloggers.com/

Plots in R and the ImageJ visualization

If you plot data in R and you would like to display the same data in the ImageJ view it is necessary to transfer the data matrix to ImageJ. The first thing which can be noticed is that the image data is displayed rotated because of the Bio7 approach to transfer data forth and back … Read more

Categories R

Ecological Modelling with “R”

Here i present some Books and Articles about Ecological Modelling and “R”. Since “R” is integrated in Bio7 all the presented methods in the Books and Articles can also be useful together with Bio7. Books: Ellner, Stephen P. & Guckenheimer, John (2006). Dynamic Models in Biology. Princeton University Press Bolker B (2008) Ecological Models and … Read more

Categories R

Data Mining Presentations

I found a nice introduction about Data Mining from Pier Luca Lanzi on slideshare. There are several parts available if you click on his profile. Here i embedded the presentation about Clustering (Partitioning) which is used (the CLARA algorithm) for example in the image methods of Bio7 to cluster spectral image information. View more presentations … Read more