First Steps

First start (Updated for Bio7 1.6!)

The Bio7 Console (Updated for Bio7 1.7.1!)

Compile Java (Updated for Bio7 1.7.1!)

A simple flow example (Updated for Bio7 1.7.1!)

A point pattern example (Updated for Bio7 1.7.1!)

Create a custom perspective in Bio7

Extend the Scripts menu of Bio7

Install the Eclipse Git plugin

R Features of Bio7

The new R-Shell interface (Updated for Bio7 1.7.1!)

Transfer values from a spreadsheet to R (Updated for Bio7 1.7.1!)

Install R packages with Bio7 (Updated for Bio7 1.7.1!)

Create a plot with R (Updated for Bio7 1.7.1!)

Animate a R plot with ImageJ (Since Bio7 1.7.1 you can simply use the plot command!)

Transfer vector data to and from R

The native R connection (Updated for Bio7 1.7.1!)

R And ImageJ

Transfer image data to and from R with Bio7 (Updated for Bio7 1.7.1!)

Transfer selected image data from a stack (Updated for Bio7 1.7.1!)

Transfer ROI Manager pixel selections of multiple layers (now called Pixel RM!)

Transfer selected pixels of all opened images

Batch process multiple images with ImageJ and R

Transfer precise values from a particle analysis to R – (Updated for Bio7 1.7.1!)

Shape analysis with ImageJ and R

Analyse videos with ImageJ and R

Cluster image data with R

Supervised learning methods for image data

Display dynamic R data in ImageJ

Cluster Particle measurements with R

Landscape Metrics with R and ImageJ


Measure the area of a leaf

Use the Points panel as an overview for the ImageJ view

Create an ImageJ Plugin with Bio7

The 3D Perspective of Bio7

The new Space view

The first OpenGL method and examples

The 3d discrete view

The WorldWind 3D Globe of Bio7

The WorldWind perspective

Visualize dynamic images on the WorldWind globe

Measurements on the WorldWind globe

Gridded Simulations

Create a grid based model

Create a  fractal landscape

Mark quads with a point pattern selection

Mark quads with a pattern for simulation


Voronoi and Delauney visualizations

JPython, Python

Interpret Python scripts in Blender interactively


Create a custom JavaFX view


Transfer population data to OpenOffice