Tutorials

1. First start (Updated for Bio7 1.6!)

2. Compile Java (Updated for Bio7 1.6!)

3. A simple flow example

4. A point pattern example (since Bio7 1.5 transfer in double precision!- see also Tut. 11 and 40!) 

5. Measure the area of a leaf

6. The 3d discrete view

7. Extend the Scripts menu of Bio7

8. Create a custom perspective in Bio7

9. Mark quads with a point pattern selection

10. Create a plot with R and Bio7

11. Transfer precise values from a particle analysis to R

12. Transfer population data to OpenOffice

13. Transfer values from a spreadsheet to R

14. Install R packages with Bio7 (Linux  – but see also Bio7 GUI in Tutorial 36!)

15. Install R packages with Bio7 (Windows  – but see Bio7 GUI in Tutorial 36!)

16. Animate a R plot with ImageJ

17. Mark quads with a pattern for simulation

18. Use the Points panel as an overview for the ImageJ view

Since Bio7 1.2

19. The new Space view

20. The first OpenGL method and examples

21. Transfer images from and to R with ImageJ

Since Bio7 1.3

22. Transfer images from and to R with ImageJ in Bio7 1.3

23. Cluster image data with R

24. Analyse videos with ImageJ and R

25. The new R-Shell interface

26. The new WorldWind perspective

Since Bio7 1.4

27. Create a  fractal landscape

28. Transfer data to R with the new R perspective

29. Transfer selected pixels of all opened images

30. Supervised learning methods for image data

31. Visualize dynamic images on the WorldWind globe

32. Measurements on the WorldWind globe

33. Shape analysis with ImageJ and R

Since Bio7 1.5

34. Create a grid based model

35. Transfer vector data to and from R

36. Install R packages with the Bio7 GUI

37. Voronoi and Delauney visualizations

38. Create a website with Bio7

39. Cluster Particle measurements with R

40. Transfer image data to and from R with Bio7 1.5

41. Display dynamic R data in ImageJ

42. Landscape Metrics with R and ImageJ

Since Bio7 1.6

43. Transfer ROI Manager pixel selections of multiple layers

44. Install the EGit plugin

45. Batch process multiple images with ImageJ and R

46. Create an ImageJ Plugin with Bio7